Last updated: 2023-03-21

Checks: 7 0

Knit directory: LSR_website_2023/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.


Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

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Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 06cae12. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .Rproj.user/

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


These are the previous versions of the repository in which changes were made to the R Markdown (analysis/publications.Rmd) and HTML (docs/publications.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html 891d56e Lena Schmidt 2021-11-17 Build site.
html 202cf69 Lena Schmidt 2021-11-05 Build site.
html 5537429 Lena Schmidt 2021-11-03 Build site.
html 7ddf636 Lena Schmidt 2021-10-18 Build site.
html 605b46f Lena Schmidt 2021-09-14 Build site.
html 3be825f Lena Schmidt 2021-09-07 Build site.
html aed42ce Lena Schmidt 2021-08-31 Build site.
Rmd 1ab9e06 Lena Schmidt 2021-08-31 Update of the <LatestUpdates> page, Updated at 2021-08-31 13:11:12
html 1ab9e06 Lena Schmidt 2021-08-31 Update of the <LatestUpdates> page, Updated at 2021-08-31 13:11:12
html 0ff9f26 Lena Schmidt 2021-08-31 Build site.
html 7d8030b Lena Schmidt 2021-08-04 Build site.
html 6124c77 Lena Schmidt 2021-08-04 Build site.
html 1399ad6 Lena Schmidt 2021-08-03 Build site.
html 2569cc1 Lena Schmidt 2021-08-03 Build site.
html e022fc2 Lena Schmidt 2021-08-03 Build site.
html 3674a0f Lena Schmidt 2021-07-07 Build site.
html 5bad23b Lena Schmidt 2021-07-07 Build site.
html 6b05077 Lena Schmidt 2021-05-20 Build site.
html 821a005 Lena Schmidt 2021-05-20 Build site.
html 1766206 Lena Schmidt 2021-05-20 Build site.
html c31a64c Lena Schmidt 2021-05-19 Build site.
html db43913 Lena Schmidt 2021-05-19 Build site.
Rmd 0194d67 Lena Schmidt 2021-05-19 Updated text after publication of base review, Updated at 2021-05-19 16:31:58
html 0194d67 Lena Schmidt 2021-05-19 Updated text after publication of base review, Updated at 2021-05-19 16:31:58
html 21b1c0f L-ENA 2020-11-13 Build site.
html 45aa0d5 L-ENA 2020-11-13 Build site.
html ed31ccb L-ENA 2020-11-06 Build site.
html a34fbc8 L-ENA 2020-10-30 Build site.
html b5505f2 L-ENA 2020-10-30 Build site.
html 93bdfca L-ENA 2020-10-30 Build site.
html 7bafffe L-ENA 2020-10-30 Build site.
html 26e1d9b L-ENA 2020-10-30 Build site.
html c16ec66 L-ENA 2020-10-30 Build site.
html c86cb34 L-ENA 2020-10-30 Build site.
Rmd 69afb05 L-ENA 2020-10-30 license updated
html e727571 L-ENA 2020-10-30 Build site.
html 798d57b L-ENA 2020-10-30 Build site.
html 7074ef2 L-ENA 2020-10-30 Build site.
Rmd aa66c47 L-ENA 2020-10-30 Customised about/publications etc
html 02b0296 L-ENA 2020-10-30 Build site.
html 5061dd3 L-ENA 2020-10-30 Build site.
Rmd e7df055 L-ENA 2020-10-30 Add my first analysis
html 581260b L-ENA 2020-10-30 Build site.
Rmd d0c43e1 L-ENA 2020-10-30 Add my first analysis

Publication of our living systematic review

The full review was published via F1000 research as Data extraction methods for systematic review (semi)automation: A living systematic review. Please cite as:

Schmidt L, Olorisade BK, McGuinness LA et al. Data extraction methods for systematic review (semi)automation: A living systematic review [version 1; peer review: 3 approved]. F1000Research 2021, 10:401 (https://doi.org/10.12688/f1000research.51117.1)

The review protocol was published via F1000 research as Data extraction methods for systematic review (semi)automation: A living review protocol. Please cite as:

Schmidt L, Olorisade BK, McGuinness LA et al. Data extraction methods for systematic review (semi)automation: A living review protocol [version 2; peer review: 2 approved]. F1000Research 2020, 9:210 (https://doi.org/10.12688/f1000research.22781.2)

The up-to-date code for the screening and literature retrieval application is available from L-ENA’s GitHub repository or as release on zenodo. Please cite as:

Luke McGuinness and Lena Schmidt. mcguinlu/COVID_suicide_living: Initial Release (Version v1.0.0). Zenodo 2020. Available from: http://doi.org/10.5281/zenodo.3871366

The review was registered prospectively on the OSF on March 9th 2020 under DOI 10.17605/OSF.IO/ECB3T


sessionInfo()
R version 4.0.3 (2020-10-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19045)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252 
[2] LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] workflowr_1.6.2

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.7      whisker_0.4     knitr_1.30      magrittr_2.0.1 
 [5] R6_2.5.0        rlang_0.4.12    fastmap_1.1.0   fansi_0.4.1    
 [9] stringr_1.4.0   tools_4.0.3     xfun_0.27       utf8_1.1.4     
[13] git2r_0.27.1    jquerylib_0.1.4 htmltools_0.5.2 ellipsis_0.3.2 
[17] rprojroot_2.0.2 yaml_2.2.1      digest_0.6.27   tibble_3.1.5   
[21] lifecycle_1.0.1 crayon_1.4.2    later_1.1.0.1   sass_0.4.0     
[25] vctrs_0.3.8     promises_1.1.1  fs_1.5.0        glue_1.4.2     
[29] evaluate_0.14   rmarkdown_2.11  stringi_1.5.3   bslib_0.3.1    
[33] compiler_4.0.3  pillar_1.6.4    jsonlite_1.7.2  httpuv_1.5.4   
[37] pkgconfig_2.0.3