Last updated: 2025-03-11
Checks: 7 0
Knit directory: LSR_website_2023/
This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.
The command set.seed(20201030)
was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.
Great job! Recording the operating system, R version, and package versions is critical for reproducibility.
Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.
Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
The results in this page were generated with repository version a445ec4. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.
Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish
or wflow_git_commit
). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
Ignored files:
Ignored: .Rhistory
Ignored: .Rproj.user/
Ignored: commands.R
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were made to the R Markdown (analysis/LatestUpdates.Rmd
) and HTML (docs/LatestUpdates.html
) files. If you’ve configured a remote Git repository (see ?wflow_git_remote
), click on the hyperlinks in the table below to view the files as they were in that past version.
File | Version | Author | Date | Message |
---|---|---|---|---|
Rmd | a445ec4 | L-ENA | 2025-03-11 | Update of general content, Updated at 2025-03-11 17:17:04 |
html | a445ec4 | L-ENA | 2025-03-11 | Update of general content, Updated at 2025-03-11 17:17:04 |
html | 5b8cb25 | L-ENA | 2025-03-11 | Build site. |
Rmd | c9c431e | L-ENA | 2025-03-11 | Update of the <LatestUpdates> page, Updated at 2025-03-11 15:09:05 |
html | c9c431e | L-ENA | 2025-03-11 | Update of the <LatestUpdates> page, Updated at 2025-03-11 15:09:05 |
html | 7434162 | L-ENA | 2023-03-21 | Build site. |
Rmd | 06cae12 | L-ENA | 2023-03-21 | Update of the <LatestUpdates> page, Updated at 2023-03-21 20:32:26 |
html | 06cae12 | L-ENA | 2023-03-21 | Update of the <LatestUpdates> page, Updated at 2023-03-21 20:32:26 |
html | 891d56e | Lena Schmidt | 2021-11-17 | Build site. |
Rmd | 7ea7a0c | Lena Schmidt | 2021-11-17 | Update of the <LatestUpdates> page, Updated at 2021-11-17 10:20:59 |
html | 7ea7a0c | Lena Schmidt | 2021-11-17 | Update of the <LatestUpdates> page, Updated at 2021-11-17 10:20:59 |
html | 202cf69 | Lena Schmidt | 2021-11-05 | Build site. |
Rmd | 53c7bf9 | Lena Schmidt | 2021-11-05 | Update of the <LatestUpdates> page, Updated at 2021-11-05 10:15:57 |
html | 53c7bf9 | Lena Schmidt | 2021-11-05 | Update of the <LatestUpdates> page, Updated at 2021-11-05 10:15:57 |
html | 5537429 | Lena Schmidt | 2021-11-03 | Build site. |
Rmd | 8c514b8 | Lena Schmidt | 2021-11-03 | Update of the <LatestUpdates> page, Updated at 2021-11-03 18:38:48 |
html | 8c514b8 | Lena Schmidt | 2021-11-03 | Update of the <LatestUpdates> page, Updated at 2021-11-03 18:38:48 |
html | 7ddf636 | Lena Schmidt | 2021-10-18 | Build site. |
Rmd | ff997c8 | Lena Schmidt | 2021-10-18 | Update of the <LatestUpdates> page, Updated at 2021-10-18 12:33:15 |
html | ff997c8 | Lena Schmidt | 2021-10-18 | Update of the <LatestUpdates> page, Updated at 2021-10-18 12:33:15 |
html | 605b46f | Lena Schmidt | 2021-09-14 | Build site. |
Rmd | 324b060 | Lena Schmidt | 2021-09-14 | Update of the <LatestUpdates> page, Updated at 2021-09-14 18:52:29 |
html | 324b060 | Lena Schmidt | 2021-09-14 | Update of the <LatestUpdates> page, Updated at 2021-09-14 18:52:29 |
html | 3be825f | Lena Schmidt | 2021-09-07 | Build site. |
Rmd | 122b016 | Lena Schmidt | 2021-09-07 | Update of the <LatestUpdates> page, Updated at 2021-09-07 19:46:49 |
html | 122b016 | Lena Schmidt | 2021-09-07 | Update of the <LatestUpdates> page, Updated at 2021-09-07 19:46:49 |
html | aed42ce | Lena Schmidt | 2021-08-31 | Build site. |
Rmd | 1ab9e06 | Lena Schmidt | 2021-08-31 | Update of the <LatestUpdates> page, Updated at 2021-08-31 13:11:12 |
html | 1ab9e06 | Lena Schmidt | 2021-08-31 | Update of the <LatestUpdates> page, Updated at 2021-08-31 13:11:12 |
html | 0ff9f26 | Lena Schmidt | 2021-08-31 | Build site. |
Rmd | 75e63b8 | Lena Schmidt | 2021-08-31 | Update of the <LatestUpdates> page, Updated at 2021-08-31 13:05:05 |
html | 75e63b8 | Lena Schmidt | 2021-08-31 | Update of the <LatestUpdates> page, Updated at 2021-08-31 13:05:05 |
html | 7d8030b | Lena Schmidt | 2021-08-04 | Build site. |
Rmd | 045e53c | Lena Schmidt | 2021-08-04 | Update of the <LatestUpdates> page, Updated at 2021-08-04 11:48:17 |
html | 045e53c | Lena Schmidt | 2021-08-04 | Update of the <LatestUpdates> page, Updated at 2021-08-04 11:48:17 |
html | 6124c77 | Lena Schmidt | 2021-08-04 | Build site. |
Rmd | 9ad94a6 | Lena Schmidt | 2021-08-04 | Update of the <LatestUpdates> page, Updated at 2021-08-04 11:40:21 |
html | 9ad94a6 | Lena Schmidt | 2021-08-04 | Update of the <LatestUpdates> page, Updated at 2021-08-04 11:40:21 |
html | 1399ad6 | Lena Schmidt | 2021-08-03 | Build site. |
Rmd | 23ebea9 | Lena Schmidt | 2021-08-03 | Update of the <LatestUpdates> page, Updated at 2021-08-03 21:02:32 |
html | 23ebea9 | Lena Schmidt | 2021-08-03 | Update of the <LatestUpdates> page, Updated at 2021-08-03 21:02:32 |
html | 2569cc1 | Lena Schmidt | 2021-08-03 | Build site. |
Rmd | 2d1140f | Lena Schmidt | 2021-08-03 | Update of the <LatestUpdates> page, Updated at 2021-08-03 20:53:19 |
html | 2d1140f | Lena Schmidt | 2021-08-03 | Update of the <LatestUpdates> page, Updated at 2021-08-03 20:53:19 |
html | e022fc2 | Lena Schmidt | 2021-08-03 | Build site. |
Rmd | 04af15f | Lena Schmidt | 2021-08-03 | Update of the <About> page, Updated at 2021-08-03 19:29:41 |
html | 04af15f | Lena Schmidt | 2021-08-03 | Update of the <About> page, Updated at 2021-08-03 19:29:41 |
html | 3674a0f | Lena Schmidt | 2021-07-07 | Build site. |
html | 5bad23b | Lena Schmidt | 2021-07-07 | Build site. |
Rmd | ff15e53 | Lena Schmidt | 2021-07-07 | Update of screening status, Updated at 2021-07-07 11:26:55 |
html | ff15e53 | Lena Schmidt | 2021-07-07 | Update of screening status, Updated at 2021-07-07 11:26:55 |
html | 6b05077 | Lena Schmidt | 2021-05-20 | Build site. |
Rmd | 41a8095 | Lena Schmidt | 2021-05-20 | Update of screening status, Updated at 2021-05-20 14:47:37 |
html | 41a8095 | Lena Schmidt | 2021-05-20 | Update of screening status, Updated at 2021-05-20 14:47:37 |
html | 821a005 | Lena Schmidt | 2021-05-20 | Build site. |
Rmd | c6cc474 | Lena Schmidt | 2021-05-20 | Update of screening status, Updated at 2021-05-20 14:45:25 |
html | c6cc474 | Lena Schmidt | 2021-05-20 | Update of screening status, Updated at 2021-05-20 14:45:25 |
html | 1766206 | Lena Schmidt | 2021-05-20 | Build site. |
Rmd | 78f494e | Lena Schmidt | 2021-05-20 | Update of screening status, Updated at 2021-05-20 14:43:29 |
html | 78f494e | Lena Schmidt | 2021-05-20 | Update of screening status, Updated at 2021-05-20 14:43:29 |
html | c31a64c | Lena Schmidt | 2021-05-19 | Build site. |
Rmd | 192ac3f | Lena Schmidt | 2021-05-19 | Updated text after publication of base review, Updated at 2021-05-19 16:31:58 |
html | 192ac3f | Lena Schmidt | 2021-05-19 | Updated text after publication of base review, Updated at 2021-05-19 16:31:58 |
html | db43913 | Lena Schmidt | 2021-05-19 | Build site. |
Rmd | 0194d67 | Lena Schmidt | 2021-05-19 | Updated text after publication of base review, Updated at 2021-05-19 16:31:58 |
html | 0194d67 | Lena Schmidt | 2021-05-19 | Updated text after publication of base review, Updated at 2021-05-19 16:31:58 |
html | 21b1c0f | L-ENA | 2020-11-13 | Build site. |
html | a8b35d4 | L-ENA | 2020-11-13 | Updated figures, Updated at 2020-11-13 19:19:40 |
html | 45aa0d5 | L-ENA | 2020-11-13 | Build site. |
Rmd | 8e98482 | L-ENA | 2020-11-13 | Added PRISMA, Updated at 2020-11-13 19:08:02 |
html | 8e98482 | L-ENA | 2020-11-13 | Added PRISMA, Updated at 2020-11-13 19:08:02 |
html | ed31ccb | L-ENA | 2020-11-06 | Build site. |
Rmd | eadb69b | L-ENA | 2020-11-06 | Updated at 2020-11-06 09:50:51 |
html | eadb69b | L-ENA | 2020-11-06 | Updated at 2020-11-06 09:50:51 |
html | a34fbc8 | L-ENA | 2020-10-30 | Build site. |
html | b5505f2 | L-ENA | 2020-10-30 | Build site. |
html | 93bdfca | L-ENA | 2020-10-30 | Build site. |
Rmd | f625ab4 | L-ENA | 2020-10-30 | added interactive plots |
html | f625ab4 | L-ENA | 2020-10-30 | added interactive plots |
html | 7bafffe | L-ENA | 2020-10-30 | Build site. |
Rmd | ef0354d | L-ENA | 2020-10-30 | add |
html | ef0354d | L-ENA | 2020-10-30 | add |
html | 26e1d9b | L-ENA | 2020-10-30 | Build site. |
html | c16ec66 | L-ENA | 2020-10-30 | Build site. |
html | c86cb34 | L-ENA | 2020-10-30 | Build site. |
Rmd | 69afb05 | L-ENA | 2020-10-30 | license updated |
Latest published version: Data extraction methods for systematic review (semi)automation: Update of a living systematic review (version 1; peer review: 3 approved)
This page contains the latest updates to this living review. We have screened and continued the work on this review, a status update and resources are given below.
This is the PRISMA diagram for the second (submitted not published) review update. It shows the flow of references from base review, as well as updates 1 and 2. The base review included 2 updated searches; the first LSR update included 6 searches; and the current 2024 update included 3 update searches until publication cut-off in August/September 2024.
The PRISMA diagrams were created using a template from Tailored PRISMA 2020 flow diagrams for living systematic reviews: a methodological survey and a proposal and an app to create the PRISMA visualisation is here
These figures represent submitted but not yet published content from the living review.
This map shows which kind of AI architecture was used in the included papers to extract the data points of interest. Each paper can include one or more combined architectures.
This map shows how granular the data extraction was for each data point of interest.
This map shows which validation metrics were applied in the included papers.
This map shows from which part of the source texts each included paper extracted the data from.
This map shows from which type of study the included publications extracted data.
sessionInfo()
R version 4.0.3 (2020-10-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19045)
Matrix products: default
locale:
[1] LC_COLLATE=English_United Kingdom.1252
[2] LC_CTYPE=English_United Kingdom.1252
[3] LC_MONETARY=English_United Kingdom.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United Kingdom.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] png_0.1-8 workflowr_1.6.2
loaded via a namespace (and not attached):
[1] Rcpp_1.0.7 pillar_1.6.4 compiler_4.0.3 bslib_0.3.1
[5] later_1.1.0.1 jquerylib_0.1.4 git2r_0.27.1 base64enc_0.1-3
[9] tools_4.0.3 digest_0.6.27 jsonlite_1.7.2 evaluate_0.14
[13] lifecycle_1.0.1 tibble_3.1.5 pkgconfig_2.0.3 rlang_0.4.12
[17] yaml_2.2.1 xfun_0.27 fastmap_1.1.0 stringr_1.4.0
[21] knitr_1.30 fs_1.5.0 vctrs_0.3.8 sass_0.4.0
[25] rprojroot_2.0.2 grid_4.0.3 glue_1.4.2 R6_2.5.0
[29] fansi_0.4.1 rmarkdown_2.11 magrittr_2.0.1 whisker_0.4
[33] promises_1.1.1 ellipsis_0.3.2 htmltools_0.5.2 httpuv_1.5.4
[37] utf8_1.1.4 stringi_1.5.3 crayon_1.4.2